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2.
Comput Math Methods Med ; 2022: 5938493, 2022.
Artigo em Inglês | MEDLINE | ID: mdl-35069786

RESUMO

In rhinoplasty, it is necessary to consider the correlation between the anthropometric indicators of the nasal bone, so that it prevents surgical complications and enhances the patient's satisfaction. The penetrating form of high-energy electromagnetic radiation is highly impacted on human health, which has often raised concerns of alternative method for facial analysis. The critical stage to assess nasal morphology is the nasal analysis on its anthropology that is highly reliant on the understanding of the structural features of the nasal radix. For example, the shape and size of nasal bone features, skin thickness, and also body factors aggregated from different facial anthropology values. In medical diagnosis, however, the morphology of the nasal bone is determined manually and significantly relies on the clinician's expertise. Furthermore, the evaluation anthropological keypoint of the nasal bone is nonrepeatable and laborious, also finding widely differ and intralaboratory variability in the results because of facial soft tissue and equipment defects. In order to overcome these problems, we propose specialized convolutional neural network (CNN) architecture to accurately predict nasal measurement based on digital 2D photogrammetry. To boost performance and efficacy, it is deliberately constructed with many layers and different filter sizes, with less filters and optimizing parameters. Through its result, the back-propagation neural network (BPNN) indicated the correlation between differences in human body factors mentioned are height, weight known as body mass index (BMI), age, gender, and the nasal bone dimension of the participant. With full of parameters could the nasal morphology be diagnostic continuously. The model's performance is evaluated on various newest architecture models such as DenseNet, ConvNet, Inception, VGG, and MobileNet. Experiments were directly conducted on different facials. The results show the proposed architecture worked well in terms of nasal properties achieved which utilize four statistical criteria named mean average precision (mAP), mean absolute error (MAE), R-square (R 2), and T-test analyzed. Data has also shown that the nasal shape of Southeast Asians, especially Vietnamese, could be divided into different types in two perspective views. From cadavers for bony datasets, nasal bones can be classified into 2 morphological types in the lateral view which "V" shape was presented by 78.8% and the remains were "S" shape evaluated based on Lazovic (2015). With 2 angular dimension averages are 136.41 ± 7.99 and 104.25 ± 5.95 represented by the nasofrontal angle (g-n-prn) and the nasomental angle (n-prn-sn), respectively. For frontal view, classified by Hwang, Tae-Sun, et al. (2005), nasal morphology of Vietnamese participants could be divided into three types: type A was present in 57.6% and type B was present in 30.3% of the noses. In particular, types C, D, and E were not a common form of Vietnamese which includes the remaining number of participants. In conclusion, the proposed model performed the potential hybrid of CNN and BPNN with its application to give expected accuracy in terms of keypoint localization and nasal morphology regression. Nasal analysis can replace MRI imaging diagnostics that are reflected by the risk to human body.


Assuntos
Osso Nasal/anatomia & histologia , Osso Nasal/diagnóstico por imagem , Redes Neurais de Computação , Fotogrametria/métodos , Adulto , Antropometria/métodos , Biologia Computacional , Feminino , Humanos , Processamento de Imagem Assistida por Computador/métodos , Processamento de Imagem Assistida por Computador/estatística & dados numéricos , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Pessoa de Meia-Idade , Modelos Anatômicos , Osso Nasal/cirurgia , Nariz/anatomia & histologia , Nariz/diagnóstico por imagem , Nariz/cirurgia , Fotogrametria/estatística & dados numéricos , Rinoplastia/métodos , Rinoplastia/estatística & dados numéricos , Cirurgia Assistida por Computador/métodos , Cirurgia Assistida por Computador/estatística & dados numéricos , Adulto Jovem
3.
Phys Chem Chem Phys ; 24(3): 1326-1337, 2022 Jan 19.
Artigo em Inglês | MEDLINE | ID: mdl-34718360

RESUMO

We combined our generalized energy-based fragmentation (GEBF) approach and machine learning (ML) technique to construct quantum mechanics (QM) quality force fields for proteins. In our scheme, the training sets for a protein are only constructed from its small subsystems, which capture all short-range interactions in the target system. The energy of a given protein is expressed as the summation of atomic contributions from QM calculations of various subsystems, corrected by long-range Coulomb and van der Waals interactions. With the Gaussian approximation potential (GAP) method, our protocol can automatically generate training sets with high efficiency. To facilitate the construction of training sets for proteins, we store all trained subsystem data in a library. If subsystems in the library are detected in a new protein, corresponding datasets can be directly reused as a part of the training set on this new protein. With two polypeptides, 4ZNN and 1XQ8 segment, as examples, the energies and forces predicted by GEBF-GAP are in good agreement with those from conventional QM calculations, and dihedral angle distributions from GEBF-GAP molecular dynamics (MD) simulations can also well reproduce those from ab initio MD simulations. In addition, with the training set generated from GEBF-GAP, we also demonstrate that GEBF-ML force fields constructed by neural network (NN) methods can also show QM quality. Therefore, the present work provides an efficient and systematic way to build QM quality force fields for biological systems.


Assuntos
Fragmentos de Peptídeos/química , alfa-Sinucleína/química , Bases de Dados de Compostos Químicos , Conjuntos de Dados como Assunto , Humanos , Aprendizado de Máquina/estatística & dados numéricos , Simulação de Dinâmica Molecular/estatística & dados numéricos , Teoria Quântica , Termodinâmica
4.
J Hepatol ; 76(3): 600-607, 2022 03.
Artigo em Inglês | MEDLINE | ID: mdl-34793867

RESUMO

BACKGROUND & AIMS: Saliva and stool microbiota are altered in cirrhosis. Since stool is logistically difficult to collect compared to saliva, it is important to determine their relative diagnostic and prognostic capabilities. We aimed to determine the ability of stool vs. saliva microbiota to differentiate between groups based on disease severity using machine learning (ML). METHODS: Controls and outpatients with cirrhosis underwent saliva and stool microbiome analysis. Controls vs. cirrhosis and within cirrhosis (based on hepatic encephalopathy [HE], proton pump inhibitor [PPI] and rifaximin use) were classified using 4 ML techniques (random forest [RF], support vector machine, logistic regression, and gradient boosting) with AUC comparisons for stool, saliva or both sample types. Individual microbial contributions were computed using feature importance of RF and Shapley additive explanations. Finally, thresholds for including microbiota were varied between 2.5% and 10%, and core microbiome (DESeq2) analysis was performed. RESULTS: Two hundred and sixty-nine participants, including 87 controls and 182 patients with cirrhosis, of whom 57 had HE, 78 were on PPIs and 29 on rifaximin were included. Regardless of the ML model, stool microbiota had a significantly higher AUC in differentiating groups vs. saliva. Regarding individual microbiota: autochthonous taxa drove the difference between controls vs. patients with cirrhosis, oral-origin microbiota the difference between PPI users/non-users, and pathobionts and autochthonous taxa the difference between rifaximin users/non-users and patients with/without HE. These were consistent with the core microbiome analysis results. CONCLUSIONS: On ML analysis, stool microbiota composition is significantly more informative in differentiating between controls and patients with cirrhosis, and those with varying cirrhosis severity, compared to saliva. Despite logistic challenges, stool should be preferred over saliva for microbiome analysis. LAY SUMMARY: Since it is harder to collect stool than saliva, we wanted to test whether microbes from saliva were better than stool in differentiating between healthy people and those with cirrhosis and, among those with cirrhosis, those with more severe disease. Using machine learning, we found that microbes in stool were more accurate than saliva alone or in combination, therefore, stool should be preferred for analysis and collection wherever possible.


Assuntos
Fezes/microbiologia , Encefalopatia Hepática/diagnóstico , Cirrose Hepática/diagnóstico , Programas de Rastreamento/normas , Saliva/microbiologia , Idoso , Feminino , Encefalopatia Hepática/fisiopatologia , Humanos , Cirrose Hepática/fisiopatologia , Aprendizado de Máquina/normas , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Programas de Rastreamento/métodos , Programas de Rastreamento/estatística & dados numéricos , Microbiota/fisiologia , Pessoa de Meia-Idade , Prognóstico
5.
PLoS One ; 16(7): e0253653, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-34197503

RESUMO

PURPOSE: To facilitate the demonstration of the prognostic value of radiomics, multicenter radiomics studies are needed. Pooling radiomic features of such data in a statistical analysis is however challenging, as they are sensitive to the variability in scanner models, acquisition protocols and reconstruction settings, which is often unavoidable in a multicentre retrospective analysis. A statistical harmonization strategy called ComBat was utilized in radiomics studies to deal with the "center-effect". The goal of the present work was to integrate a transfer learning (TL) technique within ComBat-and recently developed alternate versions of ComBat with improved flexibility (M-ComBat) and robustness (B-ComBat)-to allow the use of a previously determined harmonization transform to the radiomic feature values of new patients from an already known center. MATERIAL AND METHODS: The proposed TL approach were incorporated in the four versions of ComBat (standard, B, M, and B-M ComBat). The proposed approach was evaluated using a dataset of 189 locally advanced cervical cancer patients from 3 centers, with magnetic resonance imaging (MRI) and positron emission tomography (PET) images, with the clinical endpoint of predicting local failure. The impact performance of the TL approach was evaluated by comparing the harmonization achieved using only parts of the data to the reference (harmonization achieved using all the available data). It was performed through three different machine learning pipelines. RESULTS: The proposed TL technique was successful in harmonizing features of new patients from a known center in all versions of ComBat, leading to predictive models reaching similar performance as the ones developed using the features harmonized with all the data available. CONCLUSION: The proposed TL approach enables applying a previously determined ComBat transform to new, previously unseen data.


Assuntos
Colo do Útero/diagnóstico por imagem , Interpretação de Imagem Assistida por Computador/normas , Aprendizado de Máquina/normas , Neoplasias do Colo do Útero/diagnóstico , Adulto , Idoso , Idoso de 80 Anos ou mais , Colo do Útero/patologia , Quimiorradioterapia/métodos , Conjuntos de Dados como Assunto , Sistemas de Apoio a Decisões Clínicas/normas , Sistemas de Apoio a Decisões Clínicas/estatística & dados numéricos , Feminino , Seguimentos , Humanos , Interpretação de Imagem Assistida por Computador/métodos , Interpretação de Imagem Assistida por Computador/estatística & dados numéricos , Aprendizado de Máquina/estatística & dados numéricos , Imageamento por Ressonância Magnética/normas , Imageamento por Ressonância Magnética/estatística & dados numéricos , Pessoa de Meia-Idade , Tomografia por Emissão de Pósitrons/normas , Tomografia por Emissão de Pósitrons/estatística & dados numéricos , Estudos Retrospectivos , Tomografia Computadorizada por Raios X/normas , Tomografia Computadorizada por Raios X/estatística & dados numéricos , Resultado do Tratamento , Neoplasias do Colo do Útero/terapia , Adulto Jovem
6.
JAMA Netw Open ; 4(7): e2114723, 2021 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-34232304

RESUMO

Importance: Electronic health records (EHRs) provide a low-cost means of accessing detailed longitudinal clinical data for large populations. A lung cancer cohort assembled from EHR data would be a powerful platform for clinical outcome studies. Objective: To investigate whether a clinical cohort assembled from EHRs could be used in a lung cancer prognosis study. Design, Setting, and Participants: In this cohort study, patients with lung cancer were identified among 76 643 patients with at least 1 lung cancer diagnostic code deposited in an EHR in Mass General Brigham health care system from July 1988 to October 2018. Patients were identified via a semisupervised machine learning algorithm, for which clinical information was extracted from structured and unstructured data via natural language processing tools. Data completeness and accuracy were assessed by comparing with the Boston Lung Cancer Study and against criterion standard EHR review results. A prognostic model for non-small cell lung cancer (NSCLC) overall survival was further developed for clinical application. Data were analyzed from March 2019 through July 2020. Exposures: Clinical data deposited in EHRs for cohort construction and variables of interest for the prognostic model were collected. Main Outcomes and Measures: The primary outcomes were the performance of the lung cancer classification model and the quality of the extracted variables; the secondary outcome was the performance of the prognostic model. Results: Among 76 643 patients with at least 1 lung cancer diagnostic code, 42 069 patients were identified as having lung cancer, with a positive predictive value of 94.4%. The study cohort consisted of 35 375 patients (16 613 men [47.0%] and 18 756 women [53.0%]; 30 140 White individuals [85.2%], 1040 Black individuals [2.9%], and 857 Asian individuals [2.4%]) after excluding patients with lung cancer history and less than 14 days of follow-up after initial diagnosis. The median (interquartile range) age at diagnosis was 66.7 (58.4-74.1) years. The area under the receiver operating characteristic curves of the prognostic model for overall survival with NSCLC were 0.828 (95% CI, 0.815-0.842) for 1-year prediction, 0.825 (95% CI, 0.812-0.836) for 2-year prediction, 0.814 (95% CI, 0.800-0.826) for 3-year prediction, 0.814 (95% CI, 0.799-0.828) for 4-year prediction, and 0.812 (95% CI, 0.798-0.825) for 5-year prediction. Conclusions and Relevance: These findings suggest the feasibility of assembling a large-scale EHR-based lung cancer cohort with detailed longitudinal clinical measurements and that EHR data may be applied in cancer progression with a set of generalizable approaches.


Assuntos
Neoplasias Pulmonares/mortalidade , Aprendizado de Máquina/normas , Algoritmos , Área Sob a Curva , Boston/epidemiologia , Estudos de Coortes , Registros Eletrônicos de Saúde/estatística & dados numéricos , Feminino , Humanos , Neoplasias Pulmonares/epidemiologia , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Prognóstico , Curva ROC , Análise de Sobrevida , Sobreviventes/estatística & dados numéricos
7.
Biomed Pharmacother ; 141: 111638, 2021 Sep.
Artigo em Inglês | MEDLINE | ID: mdl-34153846

RESUMO

Repositioning or "repurposing" of existing therapies for indications of alternative disease is an attractive approach that can generate lower costs and require a shorter approval time than developing a de novo drug. The development of experimental drugs is time-consuming, expensive, and limited to a fairly small number of targets. The incorporation of separate and complementary data should be used, as each type of data set exposes a specific feature of organism knowledge Drug repurposing opportunities are often focused on sporadic findings or on time-consuming pre-clinical drug tests which are often not guided by hypothesis. In comparison, repurposing in-silico drugs is a new, hypothesis-driven method that takes advantage of big-data use. Nonetheless, the widespread use of omics technology, enhanced data storage, data sense, machine learning algorithms, and computational modeling all give unparalleled knowledge of the methods of action of biological processes and drugs, providing wide availability, for both disease-related data and drug-related data. This review has taken an in-depth look at the current state, possibilities, and limitations of further progress in the field of drug repositioning.


Assuntos
Simulação por Computador , Descoberta de Drogas/métodos , Reposicionamento de Medicamentos/métodos , Aprendizado de Máquina , Preparações Farmacêuticas/administração & dosagem , Animais , Big Data , Simulação por Computador/estatística & dados numéricos , Sistemas de Liberação de Medicamentos/métodos , Sistemas de Liberação de Medicamentos/estatística & dados numéricos , Descoberta de Drogas/estatística & dados numéricos , Reposicionamento de Medicamentos/estatística & dados numéricos , Humanos , Aprendizado de Máquina/estatística & dados numéricos
8.
Nat Biomed Eng ; 5(6): 586-599, 2021 06.
Artigo em Inglês | MEDLINE | ID: mdl-34131323

RESUMO

The low abundance of circulating tumour DNA (ctDNA) in plasma samples makes the analysis of ctDNA biomarkers for the detection or monitoring of early-stage cancers challenging. Here we show that deep methylation sequencing aided by a machine-learning classifier of methylation patterns enables the detection of tumour-derived signals at dilution factors as low as 1 in 10,000. For a total of 308 patients with surgery-resectable lung cancer and 261 age- and sex-matched non-cancer control individuals recruited from two hospitals, the assay detected 52-81% of the patients at disease stages IA to III with a specificity of 96% (95% confidence interval (CI) 93-98%). In a subgroup of 115 individuals, the assay identified, at 100% specificity (95% CI 91-100%), nearly twice as many patients with cancer as those identified by ultradeep mutation sequencing analysis. The low amounts of ctDNA permitted by machine-learning-aided deep methylation sequencing could provide advantages in cancer screening and the assessment of treatment efficacy.


Assuntos
Biomarcadores Tumorais/genética , DNA Tumoral Circulante/genética , Neoplasias Pulmonares/diagnóstico , Neoplasias Pulmonares/genética , Aprendizado de Máquina/estatística & dados numéricos , Adulto , Biomarcadores Tumorais/sangue , Estudos de Casos e Controles , DNA Tumoral Circulante/sangue , Metilação de DNA , Detecção Precoce de Câncer/métodos , Feminino , Sequenciamento de Nucleotídeos em Larga Escala , Humanos , Neoplasias Pulmonares/sangue , Neoplasias Pulmonares/patologia , Masculino , Pessoa de Meia-Idade , Análise de Sequência de DNA/métodos
9.
Pain Res Manag ; 2021: 6659133, 2021.
Artigo em Inglês | MEDLINE | ID: mdl-33986900

RESUMO

Purpose: The study explored the clinical influence, effectiveness, limitations, and human comparison outcomes of machine learning in diagnosing (1) dental diseases, (2) periodontal diseases, (3) trauma and neuralgias, (4) cysts and tumors, (5) glandular disorders, and (6) bone and temporomandibular joint as possible causes of dental and orofacial pain. Method: Scopus, PubMed, and Web of Science (all databases) were searched by 2 reviewers until 29th October 2020. Articles were screened and narratively synthesized according to PRISMA-DTA guidelines based on predefined eligibility criteria. Articles that made direct reference test comparisons to human clinicians were evaluated using the MI-CLAIM checklist. The risk of bias was assessed by JBI-DTA critical appraisal, and certainty of the evidence was evaluated using the GRADE approach. Information regarding the quantification method of dental pain and disease, the conditional characteristics of both training and test data cohort in the machine learning, diagnostic outcomes, and diagnostic test comparisons with clinicians, where applicable, were extracted. Results: 34 eligible articles were found for data synthesis, of which 8 articles made direct reference comparisons to human clinicians. 7 papers scored over 13 (out of the evaluated 15 points) in the MI-CLAIM approach with all papers scoring 5+ (out of 7) in JBI-DTA appraisals. GRADE approach revealed serious risks of bias and inconsistencies with most studies containing more positive cases than their true prevalence in order to facilitate machine learning. Patient-perceived symptoms and clinical history were generally found to be less reliable than radiographs or histology for training accurate machine learning models. A low agreement level between clinicians training the models was suggested to have a negative impact on the prediction accuracy. Reference comparisons found nonspecialized clinicians with less than 3 years of experience to be disadvantaged against trained models. Conclusion: Machine learning in dental and orofacial healthcare has shown respectable results in diagnosing diseases with symptomatic pain and with improved future iterations and can be used as a diagnostic aid in the clinics. The current review did not internally analyze the machine learning models and their respective algorithms, nor consider the confounding variables and factors responsible for shaping the orofacial disorders responsible for eliciting pain.


Assuntos
Inteligência Artificial/estatística & dados numéricos , Testes Diagnósticos de Rotina/estatística & dados numéricos , Dor Facial/terapia , Aprendizado de Máquina/estatística & dados numéricos , Manejo da Dor/estatística & dados numéricos , Algoritmos , Testes Diagnósticos de Rotina/instrumentação , Humanos , Manejo da Dor/instrumentação
10.
Br J Haematol ; 193(1): 171-175, 2021 04.
Artigo em Inglês | MEDLINE | ID: mdl-33620089

RESUMO

Disease relapse is the greatest cause of treatment failure in paediatric B-cell acute lymphoblastic leukaemia (B-ALL). Current risk stratifications fail to capture all patients at risk of relapse. Herein, we used a machine-learning approach to identify B-ALL blast-secreted factors that are associated with poor survival outcomes. Using this approach, we identified a two-gene expression signature (CKLF and IL1B) that allowed identification of high-risk patients at diagnosis. This two-gene expression signature enhances the predictive value of current at diagnosis or end-of-induction risk stratification suggesting the model can be applied continuously to help guide implementation of risk-adapted therapies.


Assuntos
Quimiocinas/genética , Interleucina-1beta/genética , Proteínas com Domínio MARVEL/genética , Aprendizado de Máquina/estatística & dados numéricos , Leucemia-Linfoma Linfoblástico de Células Precursoras B/diagnóstico , Leucemia-Linfoma Linfoblástico de Células Precursoras B/genética , Doença Aguda , Adolescente , Criança , Pré-Escolar , Feminino , Humanos , Lactente , Masculino , Leucemia-Linfoma Linfoblástico de Células Precursoras B/mortalidade , Valor Preditivo dos Testes , Recidiva , Medição de Risco/normas , Análise de Sobrevida , Transcriptoma/genética , Falha de Tratamento
11.
Medicine (Baltimore) ; 100(7): e24738, 2021 Feb 19.
Artigo em Inglês | MEDLINE | ID: mdl-33607819

RESUMO

ABSTRACT: Fine crackles are frequently heard in patients with interstitial lung diseases (ILDs) and are known as the sensitive indicator for ILDs, although the objective method for analyzing respiratory sounds including fine crackles is not clinically available. We have previously developed a machine-learning-based algorithm which can promptly analyze and quantify the respiratory sounds including fine crackles. In the present proof-of-concept study, we assessed the usefulness of fine crackles quantified by this algorithm in the diagnosis of ILDs.We evaluated the fine crackles quantitative values (FCQVs) in 60 participants who underwent high-resolution computed tomography (HRCT) and chest X-ray in our hospital. Right and left lung fields were evaluated separately.In sixty-seven lung fields with ILDs in HRCT, the mean FCQVs (0.121 ±â€Š0.090) were significantly higher than those in the lung fields without ILDs (0.032 ±â€Š0.023, P < .001). Among those with ILDs in HRCT, the mean FCQVs were significantly higher in those with idiopathic pulmonary fibrosis than in those with other types of ILDs (P = .002). In addition, the increased mean FCQV was associated with the presence of traction bronchiectasis (P = .003) and honeycombing (P = .004) in HRCT. Furthermore, in discriminating ILDs in HRCT, an FCQV-based determination of the presence or absence of fine crackles indicated a higher sensitivity compared to a chest X-ray-based determination of the presence or absence of ILDs.We herein report that the machine-learning-based quantification of fine crackles can predict the HRCT findings of lung fibrosis and can support the prompt and sensitive diagnosis of ILDs.


Assuntos
Auscultação/instrumentação , Doenças Pulmonares Intersticiais/diagnóstico , Pulmão/diagnóstico por imagem , Aprendizado de Máquina/estatística & dados numéricos , Sons Respiratórios/diagnóstico , Idoso , Idoso de 80 Anos ou mais , Algoritmos , Auscultação/métodos , Progressão da Doença , Feminino , Humanos , Fibrose Pulmonar Idiopática/diagnóstico , Fibrose Pulmonar Idiopática/epidemiologia , Doenças Pulmonares Intersticiais/diagnóstico por imagem , Masculino , Pessoa de Meia-Idade , Radiografia Torácica/métodos , Tomografia Computadorizada por Raios X/métodos
12.
J Cutan Pathol ; 48(8): 1061-1068, 2021 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-33421167

RESUMO

Artificial intelligence (AI) utilizes computer algorithms to carry out tasks with human-like intelligence. Convolutional neural networks, a type of deep learning AI, can classify basal cell carcinoma, seborrheic keratosis, and conventional nevi, highlighting the potential for deep learning algorithms to improve diagnostic workflow in dermatopathology of highly routine diagnoses. Additionally, convolutional neural networks can support the diagnosis of melanoma and may help predict disease outcomes. Capabilities of machine learning in dermatopathology can extend beyond clinical diagnosis to education and research. Intelligent tutoring systems can teach visual diagnoses in inflammatory dermatoses, with measurable cognitive effects on learners. Natural language interfaces can instruct dermatopathology trainees to produce diagnostic reports that capture relevant detail for diagnosis in compliance with guidelines. Furthermore, deep learning can power computation- and population-based research. However, there are many limitations of deep learning that need to be addressed before broad incorporation into clinical practice. The current potential of AI in dermatopathology is to supplement diagnosis, and dermatopathologist guidance is essential for the development of useful deep learning algorithms. Herein, the recent progress of AI in dermatopathology is reviewed with emphasis on how deep learning can influence diagnosis, education, and research.


Assuntos
Inteligência Artificial/estatística & dados numéricos , Dermatologia/educação , Patologia/educação , Neoplasias Cutâneas/diagnóstico , Algoritmos , Carcinoma Basocelular/diagnóstico , Carcinoma Basocelular/patologia , Aprendizado Profundo/estatística & dados numéricos , Dermatologia/instrumentação , Diagnóstico Diferencial , Testes Diagnósticos de Rotina/instrumentação , Humanos , Ceratose Seborreica/diagnóstico , Ceratose Seborreica/patologia , Aprendizado de Máquina/estatística & dados numéricos , Melanoma/diagnóstico , Melanoma/patologia , Redes Neurais de Computação , Nevo/diagnóstico , Nevo/patologia , Variações Dependentes do Observador , Patologia/instrumentação , Pesquisa/instrumentação , Neoplasias Cutâneas/patologia
13.
Acad Med ; 96(7): 954-957, 2021 07 01.
Artigo em Inglês | MEDLINE | ID: mdl-33496428

RESUMO

Machine learning (ML) algorithms are powerful prediction tools with immense potential in the clinical setting. There are a number of existing clinical tools that use ML, and many more are in development. Physicians are important stakeholders in the health care system, but most are not equipped to make informed decisions regarding deployment and application of ML technologies in patient care. It is of paramount importance that ML concepts are integrated into medical curricula to position physicians to become informed consumers of the emerging tools employing ML. This paradigm shift is similar to the evidence-based medicine (EBM) movement of the 1990s. At that time, EBM was a novel concept; now, EBM is considered an essential component of medical curricula and critical to the provision of high-quality patient care. ML has the potential to have a similar, if not greater, impact on the practice of medicine. As this technology continues its inexorable march forward, educators must continue to evaluate medical curricula to ensure that physicians are trained to be informed stakeholders in the health care of tomorrow.


Assuntos
Atenção à Saúde/organização & administração , Educação Médica/métodos , Medicina Baseada em Evidências/história , Aprendizado de Máquina/estatística & dados numéricos , Idoso , Algoritmos , Teste para COVID-19/instrumentação , Tomada de Decisão Clínica/ética , Ensaios Clínicos como Assunto , Currículo/estatística & dados numéricos , Atenção à Saúde/estatística & dados numéricos , Retinopatia Diabética/diagnóstico , Diagnóstico por Imagem/instrumentação , Feminino , História do Século XX , Humanos , Responsabilidade Legal , Masculino , Relações Médico-Paciente/ética , Médicos/organização & administração , Participação dos Interessados , Estados Unidos , United States Food and Drug Administration/legislação & jurisprudência
14.
Cancer Res ; 81(4): 816-819, 2021 02 15.
Artigo em Inglês | MEDLINE | ID: mdl-33355183

RESUMO

Identifying new drug targets and developing safe and effective drugs is both challenging and risky. Furthermore, characterizing drug development risk, the probability that a drug will eventually receive regulatory approval, has been notoriously hard given the complexities of drug biology and clinical trials. This inherent risk is often misunderstood and mischaracterized, leading to inefficient allocation of resources and, as a result, an overall reduction in R&D productivity. Here we argue that the recent resurgence of Machine Learning in combination with the availability of data can provide a more accurate and unbiased estimate of drug development risk.


Assuntos
Big Data , Desenvolvimento de Medicamentos , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos , Aprendizado de Máquina , Antineoplásicos/efeitos adversos , Sistemas de Liberação de Medicamentos/efeitos adversos , Sistemas de Liberação de Medicamentos/estatística & dados numéricos , Desenvolvimento de Medicamentos/métodos , Desenvolvimento de Medicamentos/normas , Desenvolvimento de Medicamentos/tendências , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos/epidemiologia , Efeitos Colaterais e Reações Adversas Relacionados a Medicamentos/etiologia , Feminino , Humanos , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Neoplasias/tratamento farmacológico , Neoplasias/epidemiologia , Segurança do Paciente/normas , Medição de Risco
15.
J Nurs Res ; 29(1): e135, 2020 Dec 21.
Artigo em Inglês | MEDLINE | ID: mdl-33351552

RESUMO

BACKGROUND: Surgery-related pressure injury (SRPI) is a serious problem in patients who undergo cardiovascular surgery. Identifying patients at a high risk of SRPI is important for clinicians to recognize and prevent it expeditiously. Machine learning (ML) has been widely used in the field of healthcare and is well suited to predictive analysis. PURPOSE: The aim of this study was to develop an ML-based predictive model for SRPI in patients undergoing cardiovascular surgery. METHODS: This secondary analysis of data was based on a single-center, prospective cohort analysis of 149 patients who underwent cardiovascular surgery. Data were collected from a 1,000-bed university-affiliated hospital. We developed the ML model using the XGBoost algorithm for SRPI prediction in patients undergoing cardiovascular surgery based on major potential risk factors. Model performance was tested using a receiver operating characteristic curve and the C-index. RESULTS: Of the sample of 149 patients, SRPI developed in 37, an incidence rate of 24.8%. The five most important predictors included duration of surgery, patient weight, duration of the cardiopulmonary bypass procedure, patient age, and disease category. The ML model had an area under the receiver operating characteristic curve of 0.806, which indicates that the ML model has a moderate prediction value for SRPI. CONCLUSIONS: Applying ML to clinical data may be a reliable approach to the assessment of the risk of SRPI in patients undergoing cardiovascular surgical procedures. Future studies may deploy the ML model in the clinic and focus on applying targeted interventions for SRPI and related diseases.


Assuntos
Aprendizado de Máquina/normas , Complicações Pós-Operatórias/prevenção & controle , Úlcera por Pressão/etiologia , Medição de Risco/normas , Adolescente , Adulto , Idoso , Algoritmos , Procedimentos Cirúrgicos Cardíacos/efeitos adversos , Procedimentos Cirúrgicos Cardíacos/métodos , Procedimentos Cirúrgicos Cardíacos/estatística & dados numéricos , Criança , Pré-Escolar , Estudos de Coortes , Feminino , Humanos , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Pessoa de Meia-Idade , Complicações Pós-Operatórias/diagnóstico , Úlcera por Pressão/prevenção & controle , Estudos Prospectivos , Curva ROC , Medição de Risco/métodos , Medição de Risco/estatística & dados numéricos , Fatores de Risco
16.
JMIR Public Health Surveill ; 6(3): e19975, 2020 09 02.
Artigo em Inglês | MEDLINE | ID: mdl-32876579

RESUMO

BACKGROUND: Increases in electronic nicotine delivery system (ENDS) use among high school students from 2017 to 2019 appear to be associated with the increasing popularity of the ENDS device JUUL. OBJECTIVE: We employed a content analysis approach in conjunction with natural language processing methods using Twitter data to understand salient themes regarding JUUL use on Twitter, sentiment towards JUUL, and underage JUUL use. METHODS: Between July 2018 and August 2019, 11,556 unique tweets containing a JUUL-related keyword were collected. We manually annotated 4000 tweets for JUUL-related themes of use and sentiment. We used 3 machine learning algorithms to classify positive and negative JUUL sentiments as well as underage JUUL mentions. RESULTS: Of the annotated tweets, 78.80% (3152/4000) contained a specific mention of JUUL. Only 1.43% (45/3152) of tweets mentioned using JUUL as a method of smoking cessation, and only 6.85% (216/3152) of tweets mentioned the potential health effects of JUUL use. Of the machine learning methods used, the random forest classifier was the best performing algorithm among all 3 classification tasks (ie, positive sentiment, negative sentiment, and underage JUUL mentions). CONCLUSIONS: Our findings suggest that a vast majority of Twitter users are not using JUUL to aid in smoking cessation nor do they mention the potential health benefits or detriments of JUUL use. Using machine learning algorithms to identify tweets containing underage JUUL mentions can support the timely surveillance of JUUL habits and opinions, further assisting youth-targeted public health intervention strategies.


Assuntos
Comportamento do Adolescente/psicologia , Sistemas Eletrônicos de Liberação de Nicotina/normas , Mídias Sociais/instrumentação , Adolescente , Sistemas Eletrônicos de Liberação de Nicotina/estatística & dados numéricos , Feminino , Humanos , Aprendizado de Máquina/estatística & dados numéricos , Masculino , Processamento de Linguagem Natural , Mídias Sociais/estatística & dados numéricos
17.
Ann ICRP ; 49(1_suppl): 141-142, 2020 Dec.
Artigo em Inglês | MEDLINE | ID: mdl-32840380

RESUMO

The Medical Futurist says that radiology is one of the fastest growing and developing areas of medicine, and therefore this might be the speciality in which we can expect to see the largest steps in development. So why do they think that, and does it apply to dose monitoring? The move from retrospective dose evaluation to a proactive dose management approach represents a serious area of research. Indeed, artificial intelligence and machine learning are consistently being integrated into best-in-class dose management software solutions. The development of clinical analytics and dashboards are already supporting operators in their decision-making, and these optimisations - if taken beyond a single machine, a single department, or a single health network - have the potential to drive real and lasting change. The question is for whom exactly are these innovations being developed? How can the patient know that their scan has been performed to the absolute best that the technology can deliver? Do they know or even care how much their lifetime risk for developing cancer has changed post examination? Do they want a personalised size-specific dose estimate or perhaps an individual organ dose assessment to share on Instagram? Let's get real about the clinical utility and regulatory application of dose monitoring, and shine a light on the shared responsibility in applying the technology and the associated innovations.


Assuntos
Inteligência Artificial/estatística & dados numéricos , Invenções/estatística & dados numéricos , Aprendizado de Máquina/estatística & dados numéricos , Doses de Radiação , Monitoramento de Radiação/estatística & dados numéricos , Proteção Radiológica/estatística & dados numéricos , Humanos , Invenções/tendências , Monitoramento de Radiação/instrumentação , Proteção Radiológica/instrumentação
18.
Biochim Biophys Acta Mol Basis Dis ; 1866(8): 165822, 2020 08 01.
Artigo em Inglês | MEDLINE | ID: mdl-32360590

RESUMO

Lung cancer is one of the most common cancer types worldwide and causes more than one million deaths annually. Lung adenocarcinoma (AC) and lung squamous cell cancer (SCC) are two major lung cancer subtypes and have different characteristics in several aspects. Identifying their differentially expressed genes and different gene expression patterns can deepen our understanding of these two subtypes at the transcriptomic level. In this work, we used several machine learning algorithms to investigate the gene expression profiles of lung AC and lung SCC samples retrieved from Gene Expression Omnibus. First, the profiles were analyzed by using a powerful feature selection method, namely, Monte Carlo feature selection. A feature list, ranking all features according to their importance, and some informative features were obtained. Then, the feature list was used in the incremental feature selection method to extract optimal features, which can allow the support vector machine (SVM) to yield the best performance for classifying lung AC and lung SCC samples. Some top genes (CSTA, TP63, SERPINB13, CLCA2, BICD2, PERP, FAT2, BNC1, ATP11B, FAM83B, KRT5, PARD6G, PKP1) were extensively analyzed to prove that they can be differentially expressed genes between lung AC and lung SCC. Meanwhile, a rule learning procedure was applied on informative features to construct the classification rules. These rules provide a clear procedure of classification and show some different gene expression patterns between lung AC and lung SCC.


Assuntos
Adenocarcinoma de Pulmão/genética , Carcinoma de Células Escamosas/genética , Biologia Computacional/métodos , Regulação Neoplásica da Expressão Gênica , Neoplasias Pulmonares/genética , Aprendizado de Máquina/estatística & dados numéricos , Adenocarcinoma de Pulmão/diagnóstico , Adenocarcinoma de Pulmão/metabolismo , Adenocarcinoma de Pulmão/patologia , Adenosina Trifosfatases/genética , Adenosina Trifosfatases/metabolismo , Caderinas/genética , Caderinas/metabolismo , Carcinoma de Células Escamosas/diagnóstico , Carcinoma de Células Escamosas/metabolismo , Carcinoma de Células Escamosas/patologia , Cistatina A/genética , Cistatina A/metabolismo , Conjuntos de Dados como Assunto , Diagnóstico Diferencial , Perfilação da Expressão Gênica , Humanos , Neoplasias Pulmonares/diagnóstico , Neoplasias Pulmonares/metabolismo , Neoplasias Pulmonares/patologia , Proteínas de Membrana Transportadoras/genética , Proteínas de Membrana Transportadoras/metabolismo , Método de Monte Carlo , Serpinas/genética , Serpinas/metabolismo , Terminologia como Assunto , Fatores de Transcrição/genética , Fatores de Transcrição/metabolismo , Transcriptoma , Proteínas Supressoras de Tumor/genética , Proteínas Supressoras de Tumor/metabolismo
19.
PLoS One ; 15(4): e0231500, 2020.
Artigo em Inglês | MEDLINE | ID: mdl-32320429

RESUMO

Modern survey methods may be subject to non-observable bias, from various sources. Among online surveys, for example, selection bias is prevalent, due to the sampling mechanism commonly used, whereby participants self-select from a subgroup whose characteristics differ from those of the target population. Several techniques have been proposed to tackle this issue. One such is Propensity Score Adjustment (PSA), which is widely used and has been analysed in various studies. The usual method of estimating the propensity score is logistic regression, which requires a reference probability sample in addition to the online nonprobability sample. The predicted propensities can be used for reweighting using various estimators. However, in the online survey context, there are alternatives that might outperform logistic regression regarding propensity estimation. The aim of the present study is to determine the efficiency of some of these alternatives, involving Machine Learning (ML) classification algorithms. PSA is applied in two simulation scenarios, representing situations commonly found in online surveys, using logistic regression and ML models for propensity estimation. The results obtained show that ML algorithms remove selection bias more effectively than logistic regression when used for PSA, but that their efficacy depends largely on the selection mechanism employed and the dimensionality of the data.


Assuntos
Aprendizado de Máquina/estatística & dados numéricos , Inquéritos e Questionários/estatística & dados numéricos , Algoritmos , Simulação por Computador/estatística & dados numéricos , Interpretação Estatística de Dados , Humanos , Modelos Logísticos , Pontuação de Propensão , Projetos de Pesquisa/estatística & dados numéricos , Viés de Seleção
20.
Breast ; 49: 115-122, 2020 Feb.
Artigo em Inglês | MEDLINE | ID: mdl-31786416

RESUMO

In patients with locally advanced breast cancer undergoing neoadjuvant chemotherapy (NAC), some patients achieve a complete pathologic response (pCR), some achieve a partial response, and some do not respond at all or even progress. Accurate prediction of treatment response has the potential to improve patient care by improving prognostication, enabling de-escalation of toxic treatment that has little benefit, facilitating upfront use of novel targeted therapies, and avoiding delays to surgery. Visual inspection of a patient's tumor on multiparametric MRI is insufficient to predict that patient's response to NAC. However, machine learning and deep learning approaches using a mix of qualitative and quantitative MRI features have recently been applied to predict treatment response early in the course of or even before the start of NAC. This is a novel field but the data published so far has shown promising results. We provide an overview of the machine learning and deep learning models developed to date, as well as discuss some of the challenges to clinical implementation.


Assuntos
Neoplasias da Mama/tratamento farmacológico , Quimioterapia Adjuvante/estatística & dados numéricos , Aprendizado de Máquina/estatística & dados numéricos , Imageamento por Ressonância Magnética Multiparamétrica/estatística & dados numéricos , Terapia Neoadjuvante/estatística & dados numéricos , Adulto , Mama/diagnóstico por imagem , Feminino , Humanos , Pessoa de Meia-Idade , Valor Preditivo dos Testes , Resultado do Tratamento
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